Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BB51-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BB51-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BB51-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BB51-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76875925 total, 53966 skipped (flags/unmapped)
Fragments: 38511841 total (38276501 tlen-paired, 3308 hash-paired, 261 singletons, 12947 discordant, 218824 orphans, 8681 too large [>5000 bp], 12584633 duplicates)
Reads: 82722876 total, 47810 skipped (flags/unmapped)
Fragments: 41440197 total (41204903 tlen-paired, 3520 hash-paired, 319 singletons, 8882 discordant, 222573 orphans, 8782 too large [>5000 bp], 13312125 duplicates)
Reads: 89916629 total, 83023 skipped (flags/unmapped)
Fragments: 45115277 total (44507290 tlen-paired, 3564 hash-paired, 331 singletons, 111933 discordant, 492159 orphans, 47771 too large [>5000 bp], 14885187 duplicates)
Reads: 89226239 total, 49992 skipped (flags/unmapped)
Fragments: 44703469 total (44410550 tlen-paired, 4513 hash-paired, 319 singletons, 13097 discordant, 274990 orphans, 22309 too large [>5000 bp], 14721493 duplicates)