Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BXEC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BXEC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BXEC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BXEC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93939178 total, 66925 skipped (flags/unmapped)
Fragments: 47068710 total (46763552 tlen-paired, 3656 hash-paired, 367 singletons, 16185 discordant, 284950 orphans, 10075 too large [>5000 bp], 16833797 duplicates)
Reads: 100545310 total, 57229 skipped (flags/unmapped)
Fragments: 50377133 total (50072594 tlen-paired, 3097 hash-paired, 466 singletons, 11411 discordant, 289565 orphans, 11923 too large [>5000 bp], 17754372 duplicates)
Reads: 99629505 total, 61801 skipped (flags/unmapped)
Fragments: 49921375 total (49573499 tlen-paired, 5752 hash-paired, 333 singletons, 14102 discordant, 327689 orphans, 26488 too large [>5000 bp], 18045609 duplicates)
Reads: 109674113 total, 99779 skipped (flags/unmapped)
Fragments: 55042351 total (54247669 tlen-paired, 4384 hash-paired, 421 singletons, 151716 discordant, 638161 orphans, 64107 too large [>5000 bp], 19929031 duplicates)