Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_HWV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_HWV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_HWV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_HWV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96648821 total, 69676 skipped (flags/unmapped)
Fragments: 48422135 total (48115821 tlen-paired, 2503 hash-paired, 426 singletons, 15334 discordant, 288051 orphans, 11676 too large [>5000 bp], 17964652 duplicates)
Reads: 104003073 total, 59447 skipped (flags/unmapped)
Fragments: 52108981 total (51795704 tlen-paired, 4445 hash-paired, 443 singletons, 10468 discordant, 297921 orphans, 12014 too large [>5000 bp], 19031625 duplicates)
Reads: 103059488 total, 62233 skipped (flags/unmapped)
Fragments: 51640130 total (51309322 tlen-paired, 4856 hash-paired, 347 singletons, 13185 discordant, 312420 orphans, 14881 too large [>5000 bp], 19345535 duplicates)
Reads: 113050526 total, 106186 skipped (flags/unmapped)
Fragments: 56740718 total (55903612 tlen-paired, 4051 hash-paired, 431 singletons, 160831 discordant, 671793 orphans, 67564 too large [>5000 bp], 21223558 duplicates)