Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BLT7-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BLT7-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BLT7-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BLT7-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96783921 total, 68592 skipped (flags/unmapped)
Fragments: 48492500 total (48180070 tlen-paired, 3376 hash-paired, 391 singletons, 18097 discordant, 290566 orphans, 10643 too large [>5000 bp], 17505022 duplicates)
Reads: 104406739 total, 63355 skipped (flags/unmapped)
Fragments: 52309179 total (51988445 tlen-paired, 5487 hash-paired, 494 singletons, 13211 discordant, 301542 orphans, 13531 too large [>5000 bp], 18590323 duplicates)
Reads: 103318842 total, 64447 skipped (flags/unmapped)
Fragments: 51766240 total (51419650 tlen-paired, 6874 hash-paired, 379 singletons, 15535 discordant, 323802 orphans, 23048 too large [>5000 bp], 18830905 duplicates)
Reads: 113676804 total, 96864 skipped (flags/unmapped)
Fragments: 57045063 total (56259938 tlen-paired, 2225 hash-paired, 416 singletons, 149278 discordant, 633206 orphans, 61718 too large [>5000 bp], 20804142 duplicates)