Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BIC6-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BIC6-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BIC6-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BIC6-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80115587 total, 47255 skipped (flags/unmapped)
Fragments: 40145345 total (39872802 tlen-paired, 4426 hash-paired, 287 singletons, 10183 discordant, 257647 orphans, 17788 too large [>5000 bp], 13475751 duplicates)
Reads: 80444714 total, 41363 skipped (flags/unmapped)
Fragments: 40309088 total (40068423 tlen-paired, 2736 hash-paired, 361 singletons, 8034 discordant, 229534 orphans, 7535 too large [>5000 bp], 13232948 duplicates)
Reads: 75412433 total, 52272 skipped (flags/unmapped)
Fragments: 37783758 total (37541876 tlen-paired, 4028 hash-paired, 334 singletons, 12193 discordant, 225327 orphans, 9153 too large [>5000 bp], 12607975 duplicates)
Reads: 88550973 total, 74139 skipped (flags/unmapped)
Fragments: 44446099 total (43797438 tlen-paired, 2696 hash-paired, 331 singletons, 125565 discordant, 520069 orphans, 52518 too large [>5000 bp], 14949867 duplicates)