Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BR9Z-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BR9Z-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BR9Z-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BR9Z-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71147281 total, 50596 skipped (flags/unmapped)
Fragments: 35636543 total (35429439 tlen-paired, 2331 hash-paired, 323 singletons, 11262 discordant, 193188 orphans, 8555 too large [>5000 bp], 11069142 duplicates)
Reads: 75828435 total, 45560 skipped (flags/unmapped)
Fragments: 37985320 total (37740035 tlen-paired, 4344 hash-paired, 240 singletons, 10198 discordant, 230503 orphans, 21489 too large [>5000 bp], 11841828 duplicates)
Reads: 76354922 total, 44275 skipped (flags/unmapped)
Fragments: 38245608 total (38037423 tlen-paired, 2758 hash-paired, 306 singletons, 7906 discordant, 197215 orphans, 8476 too large [>5000 bp], 11664902 duplicates)
Reads: 83357329 total, 75968 skipped (flags/unmapped)
Fragments: 41813803 total (41275500 tlen-paired, 3400 hash-paired, 328 singletons, 103382 discordant, 431193 orphans, 42638 too large [>5000 bp], 13074741 duplicates)