Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_VOY-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_VOY-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_VOY-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_VOY-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 53072270 total, 48223 skipped (flags/unmapped)
Fragments: 26588432 total (26406712 tlen-paired, 2726 hash-paired, 202 singletons, 8587 discordant, 170205 orphans, 8795 too large [>5000 bp], 8051303 duplicates)
Reads: 56227132 total, 39803 skipped (flags/unmapped)
Fragments: 28180064 total (27981140 tlen-paired, 3668 hash-paired, 158 singletons, 7345 discordant, 187753 orphans, 7556 too large [>5000 bp], 8570245 duplicates)
Reads: 56488212 total, 38464 skipped (flags/unmapped)
Fragments: 28307813 total (28120055 tlen-paired, 2255 hash-paired, 260 singletons, 6171 discordant, 179072 orphans, 6727 too large [>5000 bp], 8362843 duplicates)
Reads: 61616509 total, 60862 skipped (flags/unmapped)
Fragments: 30940796 total (30436453 tlen-paired, 1655 hash-paired, 217 singletons, 97967 discordant, 404504 orphans, 39388 too large [>5000 bp], 9410401 duplicates)