Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BPI8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1241_BPI8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BPI8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BPI8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75553331 total, 41993 skipped (flags/unmapped)
Fragments: 37874194 total (37611533 tlen-paired, 2224 hash-paired, 366 singletons, 6973 discordant, 253098 orphans, 8207 too large [>5000 bp], 12858614 duplicates)
Reads: 71166736 total, 52025 skipped (flags/unmapped)
Fragments: 35667706 total (35417170 tlen-paired, 2478 hash-paired, 302 singletons, 9955 discordant, 237801 orphans, 8701 too large [>5000 bp], 12312840 duplicates)
Reads: 83832426 total, 79718 skipped (flags/unmapped)
Fragments: 42124733 total (41356714 tlen-paired, 2416 hash-paired, 305 singletons, 150073 discordant, 615225 orphans, 59386 too large [>5000 bp], 14553437 duplicates)
Reads: 82848926 total, 47063 skipped (flags/unmapped)
Fragments: 41528722 total (41223771 tlen-paired, 2431 hash-paired, 245 singletons, 9631 discordant, 292644 orphans, 18654 too large [>5000 bp], 14394359 duplicates)