Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_URM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_URM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_URM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_URM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76469984 total, 58484 skipped (flags/unmapped)
Fragments: 38324937 total (38055575 tlen-paired, 3014 hash-paired, 268 singletons, 11966 discordant, 254114 orphans, 8004 too large [>5000 bp], 13973761 duplicates)
Reads: 81219498 total, 50698 skipped (flags/unmapped)
Fragments: 40706487 total (40432458 tlen-paired, 2562 hash-paired, 369 singletons, 8015 discordant, 263083 orphans, 9639 too large [>5000 bp], 14544667 duplicates)
Reads: 89500294 total, 55580 skipped (flags/unmapped)
Fragments: 44858491 total (44532809 tlen-paired, 4126 hash-paired, 270 singletons, 12244 discordant, 309042 orphans, 18522 too large [>5000 bp], 16421101 duplicates)
Reads: 89812033 total, 86557 skipped (flags/unmapped)
Fragments: 45113944 total (44335218 tlen-paired, 3598 hash-paired, 345 singletons, 147948 discordant, 626835 orphans, 62384 too large [>5000 bp], 16513038 duplicates)