Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_ZS5-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_ZS5-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_ZS5-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_ZS5-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61796537 total, 44032 skipped (flags/unmapped)
Fragments: 30943994 total (30786342 tlen-paired, 2968 hash-paired, 288 singletons, 8125 discordant, 146271 orphans, 5538 too large [>5000 bp], 9507404 duplicates)
Reads: 66059497 total, 36063 skipped (flags/unmapped)
Fragments: 33080947 total (32923783 tlen-paired, 2177 hash-paired, 300 singletons, 5269 discordant, 149418 orphans, 5629 too large [>5000 bp], 9991619 duplicates)
Reads: 72059293 total, 40240 skipped (flags/unmapped)
Fragments: 36087837 total (35894610 tlen-paired, 2800 hash-paired, 256 singletons, 8230 discordant, 181941 orphans, 12788 too large [>5000 bp], 11141183 duplicates)
Reads: 72386806 total, 63835 skipped (flags/unmapped)
Fragments: 36299064 total (35878175 tlen-paired, 2192 hash-paired, 281 singletons, 78778 discordant, 339638 orphans, 32381 too large [>5000 bp], 11224052 duplicates)