Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BC6-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BC6-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BC6-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BC6-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 102122560 total, 70038 skipped (flags/unmapped)
Fragments: 51159112 total (50853494 tlen-paired, 4629 hash-paired, 381 singletons, 15919 discordant, 284689 orphans, 9684 too large [>5000 bp], 18896763 duplicates)
Reads: 110198104 total, 57295 skipped (flags/unmapped)
Fragments: 55208109 total (54896466 tlen-paired, 3574 hash-paired, 491 singletons, 11204 discordant, 296374 orphans, 10728 too large [>5000 bp], 19973892 duplicates)
Reads: 108754137 total, 62616 skipped (flags/unmapped)
Fragments: 54486539 total (54133559 tlen-paired, 5682 hash-paired, 329 singletons, 14197 discordant, 332772 orphans, 25772 too large [>5000 bp], 20257788 duplicates)
Reads: 118604862 total, 108229 skipped (flags/unmapped)
Fragments: 59509269 total (58698195 tlen-paired, 5704 hash-paired, 416 singletons, 154163 discordant, 650791 orphans, 64651 too large [>5000 bp], 22128425 duplicates)