Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_02C-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_02C-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_02C-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_02C-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93827474 total, 64901 skipped (flags/unmapped)
Fragments: 46988696 total (46732319 tlen-paired, 3705 hash-paired, 414 singletons, 13899 discordant, 238359 orphans, 11977 too large [>5000 bp], 16017714 duplicates)
Reads: 99880219 total, 58426 skipped (flags/unmapped)
Fragments: 50027978 total (49729708 tlen-paired, 7324 hash-paired, 389 singletons, 12415 discordant, 278142 orphans, 22184 too large [>5000 bp], 17167265 duplicates)
Reads: 100542090 total, 53077 skipped (flags/unmapped)
Fragments: 50356517 total (50098710 tlen-paired, 3925 hash-paired, 428 singletons, 9667 discordant, 243787 orphans, 10097 too large [>5000 bp], 16891999 duplicates)
Reads: 109250329 total, 94452 skipped (flags/unmapped)
Fragments: 54789019 total (54131696 tlen-paired, 2513 hash-paired, 385 singletons, 125091 discordant, 529334 orphans, 53779 too large [>5000 bp], 18827421 duplicates)