Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_6KC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6KC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6KC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6KC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88476336 total, 58072 skipped (flags/unmapped)
Fragments: 44307487 total (44078676 tlen-paired, 2691 hash-paired, 314 singletons, 12852 discordant, 212954 orphans, 8279 too large [>5000 bp], 15783947 duplicates)
Reads: 94120955 total, 50094 skipped (flags/unmapped)
Fragments: 47134172 total (46907026 tlen-paired, 3444 hash-paired, 357 singletons, 8635 discordant, 214710 orphans, 8792 too large [>5000 bp], 16626549 duplicates)
Reads: 103585910 total, 86721 skipped (flags/unmapped)
Fragments: 51940859 total (51352348 tlen-paired, 2817 hash-paired, 346 singletons, 109455 discordant, 475893 orphans, 46855 too large [>5000 bp], 18784802 duplicates)
Reads: 102902802 total, 54097 skipped (flags/unmapped)
Fragments: 51532232 total (51265863 tlen-paired, 4869 hash-paired, 335 singletons, 12777 discordant, 248388 orphans, 16482 too large [>5000 bp], 18592896 duplicates)