Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_9RM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_9RM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_9RM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_9RM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86378897 total, 59225 skipped (flags/unmapped)
Fragments: 43284205 total (42997057 tlen-paired, 3390 hash-paired, 383 singletons, 14404 discordant, 268971 orphans, 10308 too large [>5000 bp], 15581673 duplicates)
Reads: 91888029 total, 53994 skipped (flags/unmapped)
Fragments: 46051760 total (45736365 tlen-paired, 4722 hash-paired, 312 singletons, 11270 discordant, 299091 orphans, 14959 too large [>5000 bp], 16672596 duplicates)
Reads: 92757768 total, 51020 skipped (flags/unmapped)
Fragments: 46482631 total (46190539 tlen-paired, 2647 hash-paired, 354 singletons, 9529 discordant, 279562 orphans, 10701 too large [>5000 bp], 16417629 duplicates)
Reads: 101494258 total, 88642 skipped (flags/unmapped)
Fragments: 50956387 total (50165393 tlen-paired, 2602 hash-paired, 369 singletons, 154214 discordant, 633809 orphans, 63510 too large [>5000 bp], 18448518 duplicates)