Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BR3V-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BR3V-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BR3V-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BR3V-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86400483 total, 50103 skipped (flags/unmapped)
Fragments: 43315646 total (42966161 tlen-paired, 4828 hash-paired, 291 singletons, 13141 discordant, 331225 orphans, 25302 too large [>5000 bp], 15228106 duplicates)
Reads: 87517788 total, 48978 skipped (flags/unmapped)
Fragments: 43870134 total (43565024 tlen-paired, 2775 hash-paired, 441 singletons, 10339 discordant, 291555 orphans, 10269 too large [>5000 bp], 15082219 duplicates)
Reads: 81264603 total, 55222 skipped (flags/unmapped)
Fragments: 40738342 total (40437058 tlen-paired, 2865 hash-paired, 382 singletons, 14626 discordant, 283411 orphans, 8245 too large [>5000 bp], 14282108 duplicates)
Reads: 95437949 total, 84423 skipped (flags/unmapped)
Fragments: 47940853 total (47113638 tlen-paired, 2781 hash-paired, 400 singletons, 160424 discordant, 663610 orphans, 67915 too large [>5000 bp], 16882796 duplicates)