Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BA21-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BA21-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BA21-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BA21-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90506166 total, 67663 skipped (flags/unmapped)
Fragments: 45327037 total (45070023 tlen-paired, 4438 hash-paired, 345 singletons, 13343 discordant, 238888 orphans, 11831 too large [>5000 bp], 15624884 duplicates)
Reads: 96710807 total, 54877 skipped (flags/unmapped)
Fragments: 48439308 total (48181646 tlen-paired, 3132 hash-paired, 438 singletons, 9464 discordant, 244628 orphans, 11190 too large [>5000 bp], 16454068 duplicates)
Reads: 105795014 total, 97441 skipped (flags/unmapped)
Fragments: 53072833 total (52386873 tlen-paired, 2589 hash-paired, 368 singletons, 128612 discordant, 554391 orphans, 53333 too large [>5000 bp], 18427271 duplicates)
Reads: 106252597 total, 59683 skipped (flags/unmapped)
Fragments: 53220856 total (52923870 tlen-paired, 4683 hash-paired, 332 singletons, 13389 discordant, 278582 orphans, 15058 too large [>5000 bp], 18430670 duplicates)