Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_1AK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_1AK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_1AK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_1AK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92272644 total, 66257 skipped (flags/unmapped)
Fragments: 46248161 total (45921587 tlen-paired, 4544 hash-paired, 350 singletons, 12101 discordant, 309579 orphans, 9997 too large [>5000 bp], 17897888 duplicates)
Reads: 98083745 total, 59546 skipped (flags/unmapped)
Fragments: 49175487 total (48798468 tlen-paired, 3802 hash-paired, 353 singletons, 10510 discordant, 362354 orphans, 17966 too large [>5000 bp], 19089031 duplicates)
Reads: 99300474 total, 60027 skipped (flags/unmapped)
Fragments: 49775553 total (49428861 tlen-paired, 4788 hash-paired, 452 singletons, 8667 discordant, 332785 orphans, 11289 too large [>5000 bp], 18870417 duplicates)
Reads: 108580297 total, 98418 skipped (flags/unmapped)
Fragments: 54557080 total (53553802 tlen-paired, 4812 hash-paired, 451 singletons, 199811 discordant, 798204 orphans, 83187 too large [>5000 bp], 21188620 duplicates)