Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BH3F-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BH3F-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BH3F-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BH3F-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66481192 total, 49284 skipped (flags/unmapped)
Fragments: 33295935 total (33105949 tlen-paired, 3498 hash-paired, 303 singletons, 8418 discordant, 177767 orphans, 9054 too large [>5000 bp], 11317569 duplicates)
Reads: 70800109 total, 41600 skipped (flags/unmapped)
Fragments: 35469291 total (35250866 tlen-paired, 4365 hash-paired, 221 singletons, 7791 discordant, 206048 orphans, 13098 too large [>5000 bp], 12074288 duplicates)
Reads: 71562965 total, 39212 skipped (flags/unmapped)
Fragments: 35847681 total (35652676 tlen-paired, 1794 hash-paired, 332 singletons, 5884 discordant, 186995 orphans, 7859 too large [>5000 bp], 11922829 duplicates)
Reads: 77945034 total, 68648 skipped (flags/unmapped)
Fragments: 39108370 total (38569535 tlen-paired, 3174 hash-paired, 303 singletons, 105229 discordant, 430129 orphans, 45039 too large [>5000 bp], 13352759 duplicates)