Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BD37-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BD37-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BD37-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BD37-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86410508 total, 59554 skipped (flags/unmapped)
Fragments: 43309667 total (43004757 tlen-paired, 3010 hash-paired, 301 singletons, 13334 discordant, 288265 orphans, 10093 too large [>5000 bp], 15628262 duplicates)
Reads: 92772705 total, 53000 skipped (flags/unmapped)
Fragments: 46495330 total (46185049 tlen-paired, 3405 hash-paired, 382 singletons, 9669 discordant, 296825 orphans, 13126 too large [>5000 bp], 16494904 duplicates)
Reads: 100659153 total, 54424 skipped (flags/unmapped)
Fragments: 50460151 total (50087049 tlen-paired, 4001 hash-paired, 305 singletons, 13906 discordant, 354890 orphans, 19811 too large [>5000 bp], 18349909 duplicates)
Reads: 101663388 total, 91748 skipped (flags/unmapped)
Fragments: 51064272 total (50195857 tlen-paired, 3121 hash-paired, 373 singletons, 165464 discordant, 699457 orphans, 71463 too large [>5000 bp], 18580021 duplicates)