Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BYCX-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BYCX-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BYCX-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BYCX-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70440773 total, 52307 skipped (flags/unmapped)
Fragments: 35296142 total (35063151 tlen-paired, 3023 hash-paired, 206 singletons, 11720 discordant, 218042 orphans, 7215 too large [>5000 bp], 12267264 duplicates)
Reads: 76085495 total, 42244 skipped (flags/unmapped)
Fragments: 38127065 total (37890296 tlen-paired, 1866 hash-paired, 360 singletons, 8068 discordant, 226475 orphans, 7978 too large [>5000 bp], 12976562 duplicates)
Reads: 82615893 total, 47647 skipped (flags/unmapped)
Fragments: 41400515 total (41118067 tlen-paired, 5688 hash-paired, 269 singletons, 12114 discordant, 264377 orphans, 15931 too large [>5000 bp], 14442639 duplicates)
Reads: 82925754 total, 77399 skipped (flags/unmapped)
Fragments: 41632176 total (40989681 tlen-paired, 2185 hash-paired, 303 singletons, 121067 discordant, 518940 orphans, 51623 too large [>5000 bp], 14526930 duplicates)