Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BA5Y-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BA5Y-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BA5Y-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BA5Y-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 47081715 total, 36755 skipped (flags/unmapped)
Fragments: 23591202 total (23430005 tlen-paired, 2010 hash-paired, 190 singletons, 8677 discordant, 150320 orphans, 6533 too large [>5000 bp], 7608363 duplicates)
Reads: 50292663 total, 33767 skipped (flags/unmapped)
Fragments: 25205313 total (25022290 tlen-paired, 2495 hash-paired, 162 singletons, 7718 discordant, 172648 orphans, 10540 too large [>5000 bp], 8138828 duplicates)
Reads: 50698403 total, 31475 skipped (flags/unmapped)
Fragments: 25405941 total (25240798 tlen-paired, 1982 hash-paired, 198 singletons, 6283 discordant, 156680 orphans, 5962 too large [>5000 bp], 8036098 duplicates)
Reads: 55351700 total, 52815 skipped (flags/unmapped)
Fragments: 27786418 total (27361708 tlen-paired, 1504 hash-paired, 231 singletons, 82267 discordant, 340708 orphans, 33494 too large [>5000 bp], 8961805 duplicates)