Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_0U-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_0U-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0U-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0U-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64131280 total, 47610 skipped (flags/unmapped)
Fragments: 32121296 total (31934642 tlen-paired, 2353 hash-paired, 251 singletons, 9037 discordant, 175013 orphans, 8171 too large [>5000 bp], 10029315 duplicates)
Reads: 68467796 total, 38753 skipped (flags/unmapped)
Fragments: 34297922 total (34109843 tlen-paired, 2020 hash-paired, 262 singletons, 6120 discordant, 179677 orphans, 6569 too large [>5000 bp], 10553674 duplicates)
Reads: 74541784 total, 67999 skipped (flags/unmapped)
Fragments: 37403968 total (36887698 tlen-paired, 2058 hash-paired, 290 singletons, 96895 discordant, 417027 orphans, 41583 too large [>5000 bp], 11741946 duplicates)
Reads: 74632377 total, 42526 skipped (flags/unmapped)
Fragments: 37390016 total (37164813 tlen-paired, 3648 hash-paired, 260 singletons, 8822 discordant, 212473 orphans, 11276 too large [>5000 bp], 11727902 duplicates)