Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BBOP-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BBOP-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BBOP-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BBOP-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88006987 total, 61496 skipped (flags/unmapped)
Fragments: 44099432 total (43810274 tlen-paired, 3655 hash-paired, 406 singletons, 15134 discordant, 269963 orphans, 8498 too large [>5000 bp], 15585510 duplicates)
Reads: 94036626 total, 53918 skipped (flags/unmapped)
Fragments: 47116608 total (46826179 tlen-paired, 4927 hash-paired, 423 singletons, 10800 discordant, 274279 orphans, 12097 too large [>5000 bp], 16408719 duplicates)
Reads: 102734157 total, 58818 skipped (flags/unmapped)
Fragments: 51481543 total (51138734 tlen-paired, 5606 hash-paired, 335 singletons, 15628 discordant, 321240 orphans, 16914 too large [>5000 bp], 18312264 duplicates)
Reads: 103156390 total, 88918 skipped (flags/unmapped)
Fragments: 51784605 total (51017909 tlen-paired, 3577 hash-paired, 390 singletons, 142701 discordant, 620028 orphans, 59340 too large [>5000 bp], 18442707 duplicates)