Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_NXK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_NXK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_NXK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_NXK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75169642 total, 52094 skipped (flags/unmapped)
Fragments: 37655793 total (37430779 tlen-paired, 2892 hash-paired, 344 singletons, 11996 discordant, 209782 orphans, 8044 too large [>5000 bp], 11577595 duplicates)
Reads: 79714238 total, 47650 skipped (flags/unmapped)
Fragments: 39937958 total (39675055 tlen-paired, 2971 hash-paired, 258 singletons, 11026 discordant, 248648 orphans, 19789 too large [>5000 bp], 12350122 duplicates)
Reads: 81103314 total, 44272 skipped (flags/unmapped)
Fragments: 40629315 total (40404144 tlen-paired, 2435 hash-paired, 392 singletons, 9006 discordant, 213338 orphans, 7071 too large [>5000 bp], 12270859 duplicates)
Reads: 87747422 total, 80677 skipped (flags/unmapped)
Fragments: 44018315 total (43442672 tlen-paired, 3131 hash-paired, 362 singletons, 109547 discordant, 462603 orphans, 46540 too large [>5000 bp], 13668360 duplicates)