Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_KDA-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_KDA-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_KDA-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_KDA-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60271046 total, 43366 skipped (flags/unmapped)
Fragments: 30191057 total (30009797 tlen-paired, 2854 hash-paired, 252 singletons, 8008 discordant, 170146 orphans, 7982 too large [>5000 bp], 9494098 duplicates)
Reads: 64600160 total, 34630 skipped (flags/unmapped)
Fragments: 32366213 total (32178145 tlen-paired, 2822 hash-paired, 289 singletons, 5594 discordant, 179363 orphans, 6378 too large [>5000 bp], 9983096 duplicates)
Reads: 70457691 total, 62672 skipped (flags/unmapped)
Fragments: 35367022 total (34842810 tlen-paired, 2309 hash-paired, 274 singletons, 99244 discordant, 422385 orphans, 41817 too large [>5000 bp], 11164281 duplicates)
Reads: 70356285 total, 37154 skipped (flags/unmapped)
Fragments: 35254647 total (35029698 tlen-paired, 2619 hash-paired, 242 singletons, 8027 discordant, 214061 orphans, 12070 too large [>5000 bp], 11104996 duplicates)