Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_0Y1-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0Y1-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0Y1-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0Y1-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86549265 total, 46791 skipped (flags/unmapped)
Fragments: 43352896 total (43118948 tlen-paired, 3180 hash-paired, 395 singletons, 8148 discordant, 222225 orphans, 9651 too large [>5000 bp], 13685230 duplicates)
Reads: 80896473 total, 52958 skipped (flags/unmapped)
Fragments: 40521313 total (40291263 tlen-paired, 2487 hash-paired, 364 singletons, 12074 discordant, 215125 orphans, 8189 too large [>5000 bp], 12958344 duplicates)
Reads: 94583359 total, 52538 skipped (flags/unmapped)
Fragments: 47376437 total (47107009 tlen-paired, 3969 hash-paired, 298 singletons, 12140 discordant, 253021 orphans, 15633 too large [>5000 bp], 15288074 duplicates)
Reads: 95011587 total, 81216 skipped (flags/unmapped)
Fragments: 47668178 total (47045369 tlen-paired, 2363 hash-paired, 329 singletons, 116515 discordant, 503602 orphans, 48973 too large [>5000 bp], 15417130 duplicates)