Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_6EG-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_6EG-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6EG-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6EG-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83332988 total, 71806 skipped (flags/unmapped)
Fragments: 41771750 total (41442562 tlen-paired, 4627 hash-paired, 405 singletons, 17925 discordant, 306231 orphans, 12159 too large [>5000 bp], 14831660 duplicates)
Reads: 89117411 total, 63691 skipped (flags/unmapped)
Fragments: 44678178 total (44327853 tlen-paired, 6390 hash-paired, 300 singletons, 15055 discordant, 328580 orphans, 13122 too large [>5000 bp], 15983889 duplicates)
Reads: 89193329 total, 61483 skipped (flags/unmapped)
Fragments: 44711808 total (44379202 tlen-paired, 5161 hash-paired, 367 singletons, 13117 discordant, 313961 orphans, 11279 too large [>5000 bp], 15620535 duplicates)
Reads: 97764717 total, 101077 skipped (flags/unmapped)
Fragments: 49106877 total (48255105 tlen-paired, 3733 hash-paired, 365 singletons, 163637 discordant, 684037 orphans, 67144 too large [>5000 bp], 17540348 duplicates)