Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_4R3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_4R3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_4R3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_4R3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67096689 total, 45768 skipped (flags/unmapped)
Fragments: 33602782 total (33421042 tlen-paired, 2197 hash-paired, 278 singletons, 8726 discordant, 170539 orphans, 8087 too large [>5000 bp], 11138498 duplicates)
Reads: 71381765 total, 42243 skipped (flags/unmapped)
Fragments: 35753035 total (35538970 tlen-paired, 3316 hash-paired, 232 singletons, 7751 discordant, 202766 orphans, 18225 too large [>5000 bp], 11879514 duplicates)
Reads: 72637686 total, 37352 skipped (flags/unmapped)
Fragments: 36382104 total (36195812 tlen-paired, 2868 hash-paired, 299 singletons, 6376 discordant, 176749 orphans, 6587 too large [>5000 bp], 11780453 duplicates)
Reads: 78430763 total, 66885 skipped (flags/unmapped)
Fragments: 39340080 total (38844140 tlen-paired, 2888 hash-paired, 282 singletons, 95116 discordant, 397654 orphans, 40827 too large [>5000 bp], 13129951 duplicates)