Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_LT1-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LT1-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LT1-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LT1-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 115044360 total, 92278 skipped (flags/unmapped)
Fragments: 57678531 total (57206011 tlen-paired, 45379 hash-paired, 9637 singletons, 10791 discordant, 406713 orphans, 5685 too large [>5000 bp], 13890802 duplicates)
Reads: 116193327 total, 87361 skipped (flags/unmapped)
Fragments: 58259401 total (57755602 tlen-paired, 45175 hash-paired, 9400 singletons, 10004 discordant, 439220 orphans, 17892 too large [>5000 bp], 13931487 duplicates)
Reads: 128455107 total, 88415 skipped (flags/unmapped)
Fragments: 64407013 total (63878811 tlen-paired, 45542 hash-paired, 10519 singletons, 8564 discordant, 463577 orphans, 13381 too large [>5000 bp], 15434142 duplicates)
Reads: 129886995 total, 160201 skipped (flags/unmapped)
Fragments: 65320751 total (63854350 tlen-paired, 50274 hash-paired, 10618 singletons, 278995 discordant, 1126514 orphans, 111212 too large [>5000 bp], 15602738 duplicates)