Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78043849 total, 55750 skipped (flags/unmapped)
Fragments: 39194712 total (38738595 tlen-paired, 18090 hash-paired, 5784 singletons, 6444 discordant, 425799 orphans, 15129 too large [>5000 bp], 7665066 duplicates)
Reads: 77183999 total, 58932 skipped (flags/unmapped)
Fragments: 38759663 total (38334049 tlen-paired, 16949 hash-paired, 5586 singletons, 6732 discordant, 396347 orphans, 3837 too large [>5000 bp], 7619801 duplicates)
Reads: 85091173 total, 55835 skipped (flags/unmapped)
Fragments: 42742842 total (42252594 tlen-paired, 19173 hash-paired, 6196 singletons, 5183 discordant, 459696 orphans, 7773 too large [>5000 bp], 8390164 duplicates)
Reads: 87882512 total, 102284 skipped (flags/unmapped)
Fragments: 44360078 total (42877412 tlen-paired, 18431 hash-paired, 6349 singletons, 295115 discordant, 1162771 orphans, 114596 too large [>5000 bp], 8612125 duplicates)