Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_X9Y-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_X9Y-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_X9Y-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_X9Y-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76542242 total, 70186 skipped (flags/unmapped)
Fragments: 38388924 total (38026962 tlen-paired, 34004 hash-paired, 6337 singletons, 7706 discordant, 313915 orphans, 7230 too large [>5000 bp], 7718109 duplicates)
Reads: 77192400 total, 63496 skipped (flags/unmapped)
Fragments: 38721947 total (38343500 tlen-paired, 35317 hash-paired, 6438 singletons, 7092 discordant, 329600 orphans, 10524 too large [>5000 bp], 7744189 duplicates)
Reads: 84367630 total, 62765 skipped (flags/unmapped)
Fragments: 42323481 total (41922770 tlen-paired, 34387 hash-paired, 6980 singletons, 5657 discordant, 353687 orphans, 9285 too large [>5000 bp], 8500591 duplicates)
Reads: 86429174 total, 112438 skipped (flags/unmapped)
Fragments: 43511713 total (42378191 tlen-paired, 36957 hash-paired, 7283 singletons, 216355 discordant, 872927 orphans, 86760 too large [>5000 bp], 8649930 duplicates)