Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_W5A-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_W5A-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_W5A-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_W5A-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 102038967 total, 82651 skipped (flags/unmapped)
Fragments: 51242627 total (50662302 tlen-paired, 29374 hash-paired, 7463 singletons, 9253 discordant, 534235 orphans, 6380 too large [>5000 bp], 12147264 duplicates)
Reads: 111332810 total, 75736 skipped (flags/unmapped)
Fragments: 55932311 total (55264796 tlen-paired, 29840 hash-paired, 7822 singletons, 7069 discordant, 622784 orphans, 11529 too large [>5000 bp], 13269975 duplicates)
Reads: 113283173 total, 81521 skipped (flags/unmapped)
Fragments: 56895916 total (56220776 tlen-paired, 32002 hash-paired, 7773 singletons, 9702 discordant, 625663 orphans, 21628 too large [>5000 bp], 13440401 duplicates)
Reads: 115578478 total, 145037 skipped (flags/unmapped)
Fragments: 58375779 total (56325272 tlen-paired, 31612 hash-paired, 8141 singletons, 396708 discordant, 1614046 orphans, 152035 too large [>5000 bp], 13674842 duplicates)