Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_Q74-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Q74-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Q74-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Q74-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74083634 total, 63015 skipped (flags/unmapped)
Fragments: 37150687 total (36822923 tlen-paired, 31579 hash-paired, 5844 singletons, 7062 discordant, 283279 orphans, 4184 too large [>5000 bp], 6446757 duplicates)
Reads: 81778904 total, 57671 skipped (flags/unmapped)
Fragments: 41013203 total (40651297 tlen-paired, 32603 hash-paired, 6382 singletons, 5164 discordant, 317757 orphans, 9483 too large [>5000 bp], 7157194 duplicates)
Reads: 82282158 total, 58706 skipped (flags/unmapped)
Fragments: 41262502 total (40894294 tlen-paired, 33711 hash-paired, 6611 singletons, 7155 discordant, 320731 orphans, 12895 too large [>5000 bp], 7146579 duplicates)
Reads: 83310366 total, 105400 skipped (flags/unmapped)
Fragments: 41932084 total (40888697 tlen-paired, 34223 hash-paired, 6663 singletons, 194178 discordant, 808323 orphans, 77892 too large [>5000 bp], 7240950 duplicates)