Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_K08-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.baiThe index file is older than the data file: 869_K08-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 869_K08-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_K08-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 101453957 total, 82083 skipped (flags/unmapped)
Fragments: 50933039 total (50390349 tlen-paired, 27750 hash-paired, 7160 singletons, 9580 discordant, 498200 orphans, 5578 too large [>5000 bp], 11999817 duplicates)
Reads: 110136512 total, 76149 skipped (flags/unmapped)
Fragments: 55307235 total (54697515 tlen-paired, 28061 hash-paired, 7498 singletons, 7112 discordant, 567049 orphans, 10220 too large [>5000 bp], 13052877 duplicates)
Reads: 112464425 total, 80302 skipped (flags/unmapped)
Fragments: 56462922 total (55850302 tlen-paired, 29367 hash-paired, 7794 singletons, 9690 discordant, 565769 orphans, 15921 too large [>5000 bp], 13245070 duplicates)
Reads: 115726496 total, 143172 skipped (flags/unmapped)
Fragments: 58390518 total (56506902 tlen-paired, 32361 hash-paired, 8064 singletons, 366667 discordant, 1476524 orphans, 143438 too large [>5000 bp], 13573814 duplicates)