Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_FGH-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FGH-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_FGH-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FGH-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69652017 total, 61072 skipped (flags/unmapped)
Fragments: 34991966 total (34571950 tlen-paired, 12801 hash-paired, 4744 singletons, 5978 discordant, 396493 orphans, 4125 too large [>5000 bp], 6409595 duplicates)
Reads: 77868930 total, 58586 skipped (flags/unmapped)
Fragments: 39126773 total (38640563 tlen-paired, 13236 hash-paired, 5247 singletons, 6268 discordant, 461459 orphans, 11752 too large [>5000 bp], 7189762 duplicates)
Reads: 76942907 total, 59408 skipped (flags/unmapped)
Fragments: 38667037 total (38181843 tlen-paired, 12349 hash-paired, 5108 singletons, 4652 discordant, 463085 orphans, 8809 too large [>5000 bp], 7089981 duplicates)
Reads: 79229138 total, 105262 skipped (flags/unmapped)
Fragments: 40057933 total (38522711 tlen-paired, 13176 hash-paired, 5374 singletons, 300214 discordant, 1216458 orphans, 114921 too large [>5000 bp], 7219451 duplicates)