Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_LVG-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LVG-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LVG-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LVG-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68110968 total, 64514 skipped (flags/unmapped)
Fragments: 34244193 total (33755879 tlen-paired, 13727 hash-paired, 4711 singletons, 7351 discordant, 462525 orphans, 12652 too large [>5000 bp], 8533308 duplicates)
Reads: 74762694 total, 53925 skipped (flags/unmapped)
Fragments: 37614998 total (37055175 tlen-paired, 15058 hash-paired, 5227 singletons, 5368 discordant, 534170 orphans, 9085 too large [>5000 bp], 9368965 duplicates)
Reads: 75053473 total, 58772 skipped (flags/unmapped)
Fragments: 37754788 total (37180043 tlen-paired, 18333 hash-paired, 5172 singletons, 7479 discordant, 543761 orphans, 17029 too large [>5000 bp], 9370716 duplicates)
Reads: 78208664 total, 97419 skipped (flags/unmapped)
Fragments: 39626453 total (37849098 tlen-paired, 16266 hash-paired, 5427 singletons, 346336 discordant, 1409326 orphans, 136546 too large [>5000 bp], 9725615 duplicates)