Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_DFS-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
The index file is older than the data file: 869_DFS-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_DFS-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_DFS-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 52109248 total, 47679 skipped (flags/unmapped)
Fragments: 26257781 total (25784338 tlen-paired, 5053 hash-paired, 4026 singletons, 4611 discordant, 459753 orphans, 4893 too large [>5000 bp], 5019041 duplicates)
Reads: 52541175 total, 42079 skipped (flags/unmapped)
Fragments: 26488430 total (25976532 tlen-paired, 6288 hash-paired, 4070 singletons, 4390 discordant, 497150 orphans, 11728 too large [>5000 bp], 5049741 duplicates)
Reads: 57430533 total, 43124 skipped (flags/unmapped)
Fragments: 28958928 total (28406489 tlen-paired, 5669 hash-paired, 4273 singletons, 3721 discordant, 538776 orphans, 6301 too large [>5000 bp], 5532276 duplicates)
Reads: 59483505 total, 78536 skipped (flags/unmapped)
Fragments: 30272593 total (28490432 tlen-paired, 6153 hash-paired, 4595 singletons, 358273 discordant, 1413140 orphans, 138759 too large [>5000 bp], 5626073 duplicates)