Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_FHY-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FHY-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FHY-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FHY-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78490806 total, 63335 skipped (flags/unmapped)
Fragments: 39405138 total (38986186 tlen-paired, 19903 hash-paired, 6278 singletons, 7074 discordant, 385697 orphans, 4585 too large [>5000 bp], 7851189 duplicates)
Reads: 87197786 total, 64048 skipped (flags/unmapped)
Fragments: 43780035 total (43292095 tlen-paired, 21793 hash-paired, 6924 singletons, 7581 discordant, 451642 orphans, 16117 too large [>5000 bp], 8667005 duplicates)
Reads: 85766713 total, 64695 skipped (flags/unmapped)
Fragments: 43067095 total (42587833 tlen-paired, 21608 hash-paired, 6784 singletons, 5298 discordant, 445572 orphans, 10092 too large [>5000 bp], 8581483 duplicates)
Reads: 88978283 total, 115268 skipped (flags/unmapped)
Fragments: 44903188 total (43430567 tlen-paired, 22710 hash-paired, 7283 singletons, 284892 discordant, 1157736 orphans, 110829 too large [>5000 bp], 8824536 duplicates)