Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_K08-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_K08-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_K08-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_K08-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91538514 total, 60480 skipped (flags/unmapped)
Fragments: 45899616 total (45520877 tlen-paired, 34503 hash-paired, 6328 singletons, 5116 discordant, 332792 orphans, 8961 too large [>5000 bp], 10386551 duplicates)
Reads: 83670550 total, 75016 skipped (flags/unmapped)
Fragments: 41936947 total (41594763 tlen-paired, 33084 hash-paired, 5859 singletons, 7116 discordant, 296125 orphans, 11812 too large [>5000 bp], 9462452 duplicates)
Reads: 92194159 total, 62158 skipped (flags/unmapped)
Fragments: 46226789 total (45836886 tlen-paired, 35160 hash-paired, 6229 singletons, 7230 discordant, 341284 orphans, 12968 too large [>5000 bp], 10362441 duplicates)
Reads: 94589083 total, 112457 skipped (flags/unmapped)
Fragments: 47582802 total (46482778 tlen-paired, 37845 hash-paired, 6562 singletons, 206175 discordant, 849442 orphans, 83513 too large [>5000 bp], 10607729 duplicates)