Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 42682217 total, 32943 skipped (flags/unmapped)
Fragments: 21480060 total (21152722 tlen-paired, 4976 hash-paired, 3326 singletons, 2966 discordant, 316070 orphans, 4275 too large [>5000 bp], 4081367 duplicates)
Reads: 42217647 total, 34518 skipped (flags/unmapped)
Fragments: 21241193 total (20928840 tlen-paired, 5253 hash-paired, 3468 singletons, 3205 discordant, 300427 orphans, 2319 too large [>5000 bp], 4086467 duplicates)
Reads: 46699983 total, 34217 skipped (flags/unmapped)
Fragments: 23507450 total (23139618 tlen-paired, 5673 hash-paired, 3828 singletons, 2519 discordant, 355812 orphans, 5253 too large [>5000 bp], 4449137 duplicates)
Reads: 48544810 total, 59896 skipped (flags/unmapped)
Fragments: 24614667 total (23441106 tlen-paired, 6185 hash-paired, 3937 singletons, 239816 discordant, 923623 orphans, 91570 too large [>5000 bp], 4586946 duplicates)