Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_34-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_34-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_34-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_34-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67856350 total, 63427 skipped (flags/unmapped)
Fragments: 34060058 total (33698018 tlen-paired, 14556 hash-paired, 5984 singletons, 6043 discordant, 335457 orphans, 7124 too large [>5000 bp], 6332239 duplicates)
Reads: 74366576 total, 54991 skipped (flags/unmapped)
Fragments: 37346332 total (36930514 tlen-paired, 14948 hash-paired, 6433 singletons, 4725 discordant, 389712 orphans, 7533 too large [>5000 bp], 6962930 duplicates)
Reads: 75232040 total, 57876 skipped (flags/unmapped)
Fragments: 37776430 total (37348066 tlen-paired, 16395 hash-paired, 6400 singletons, 6563 discordant, 399006 orphans, 13355 too large [>5000 bp], 6987533 duplicates)
Reads: 77015566 total, 106722 skipped (flags/unmapped)
Fragments: 38868528 total (37584902 tlen-paired, 15089 hash-paired, 6719 singletons, 248861 discordant, 1012957 orphans, 95732 too large [>5000 bp], 7097878 duplicates)