Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_UPJ-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_UPJ-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_UPJ-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_UPJ-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 107207565 total, 87920 skipped (flags/unmapped)
Fragments: 53733407 total (53318776 tlen-paired, 40003 hash-paired, 7514 singletons, 9557 discordant, 357557 orphans, 8951 too large [>5000 bp], 13196587 duplicates)
Reads: 107277255 total, 78499 skipped (flags/unmapped)
Fragments: 53776908 total (53331146 tlen-paired, 40667 hash-paired, 7243 singletons, 8543 discordant, 389309 orphans, 20746 too large [>5000 bp], 13154344 duplicates)
Reads: 118022318 total, 78382 skipped (flags/unmapped)
Fragments: 59168849 total (58702698 tlen-paired, 40991 hash-paired, 7858 singletons, 7056 discordant, 410246 orphans, 12171 too large [>5000 bp], 14503894 duplicates)
Reads: 120294420 total, 139419 skipped (flags/unmapped)
Fragments: 60480851 total (59187098 tlen-paired, 42804 hash-paired, 8311 singletons, 247622 discordant, 995016 orphans, 98313 too large [>5000 bp], 14711873 duplicates)