Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90314874 total, 65505 skipped (flags/unmapped)
Fragments: 45322618 total (44875657 tlen-paired, 24306 hash-paired, 6855 singletons, 7292 discordant, 408508 orphans, 9748 too large [>5000 bp], 10285788 duplicates)
Reads: 89647834 total, 82573 skipped (flags/unmapped)
Fragments: 44958854 total (44535948 tlen-paired, 25496 hash-paired, 6900 singletons, 8589 discordant, 381921 orphans, 18187 too large [>5000 bp], 10261405 duplicates)
Reads: 99932113 total, 70989 skipped (flags/unmapped)
Fragments: 50142982 total (49661961 tlen-paired, 26650 hash-paired, 7437 singletons, 6511 discordant, 440423 orphans, 11510 too large [>5000 bp], 11447896 duplicates)
Reads: 101464361 total, 119467 skipped (flags/unmapped)
Fragments: 51112783 total (49713527 tlen-paired, 28333 hash-paired, 7718 singletons, 272087 discordant, 1091118 orphans, 109082 too large [>5000 bp], 11486988 duplicates)