Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88030912 total, 63864 skipped (flags/unmapped)
Fragments: 44236085 total (43693404 tlen-paired, 13732 hash-paired, 6309 singletons, 5485 discordant, 517155 orphans, 9171 too large [>5000 bp], 10516174 duplicates)
Reads: 88799800 total, 66944 skipped (flags/unmapped)
Fragments: 44614579 total (44065285 tlen-paired, 13332 hash-paired, 6317 singletons, 7424 discordant, 522221 orphans, 16118 too large [>5000 bp], 10537096 duplicates)
Reads: 80754723 total, 70317 skipped (flags/unmapped)
Fragments: 40558720 total (40088673 tlen-paired, 12284 hash-paired, 5976 singletons, 7205 discordant, 444582 orphans, 8762 too large [>5000 bp], 9620445 duplicates)
Reads: 91689353 total, 116141 skipped (flags/unmapped)
Fragments: 46340318 total (44627432 tlen-paired, 13364 hash-paired, 6712 singletons, 335384 discordant, 1357426 orphans, 128357 too large [>5000 bp], 10801428 duplicates)