Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_34-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_34-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_34-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_34-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55528372 total, 51911 skipped (flags/unmapped)
Fragments: 27905091 total (27542938 tlen-paired, 7794 hash-paired, 4336 singletons, 4198 discordant, 345825 orphans, 8220 too large [>5000 bp], 5297546 duplicates)
Reads: 60940243 total, 43062 skipped (flags/unmapped)
Fragments: 30647232 total (30227080 tlen-paired, 8046 hash-paired, 4403 singletons, 3153 discordant, 404550 orphans, 5835 too large [>5000 bp], 5822718 duplicates)
Reads: 61434112 total, 43936 skipped (flags/unmapped)
Fragments: 30893735 total (30459753 tlen-paired, 9134 hash-paired, 4434 singletons, 4668 discordant, 415746 orphans, 11443 too large [>5000 bp], 5816079 duplicates)
Reads: 63636670 total, 80878 skipped (flags/unmapped)
Fragments: 32216494 total (30854277 tlen-paired, 7713 hash-paired, 4891 singletons, 268358 discordant, 1081255 orphans, 104475 too large [>5000 bp], 5971884 duplicates)