Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 105528510 total, 95228 skipped (flags/unmapped)
Fragments: 52939310 total (52431917 tlen-paired, 30672 hash-paired, 7611 singletons, 11015 discordant, 458095 orphans, 10184 too large [>5000 bp], 14078703 duplicates)
Reads: 106335078 total, 79286 skipped (flags/unmapped)
Fragments: 53363808 total (52809122 tlen-paired, 31293 hash-paired, 7620 singletons, 10013 discordant, 505760 orphans, 20778 too large [>5000 bp], 14124812 duplicates)
Reads: 116314088 total, 84488 skipped (flags/unmapped)
Fragments: 58369317 total (57796783 tlen-paired, 32907 hash-paired, 8413 singletons, 8281 discordant, 522933 orphans, 11156 too large [>5000 bp], 15537995 duplicates)
Reads: 119199888 total, 147787 skipped (flags/unmapped)
Fragments: 60048349 total (58390076 tlen-paired, 35088 hash-paired, 8677 singletons, 320048 discordant, 1294460 orphans, 129270 too large [>5000 bp], 15772140 duplicates)