Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_FHY-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FHY-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FHY-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FHY-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77484438 total, 69730 skipped (flags/unmapped)
Fragments: 38893402 total (38473264 tlen-paired, 16916 hash-paired, 6752 singletons, 6952 discordant, 389518 orphans, 12087 too large [>5000 bp], 9153911 duplicates)
Reads: 84627175 total, 60602 skipped (flags/unmapped)
Fragments: 42501221 total (42023934 tlen-paired, 17723 hash-paired, 6971 singletons, 5147 discordant, 447446 orphans, 9274 too large [>5000 bp], 9997261 duplicates)
Reads: 85352738 total, 59071 skipped (flags/unmapped)
Fragments: 42866724 total (42371698 tlen-paired, 17561 hash-paired, 7157 singletons, 6836 discordant, 463472 orphans, 15424 too large [>5000 bp], 10003087 duplicates)
Reads: 87878334 total, 106368 skipped (flags/unmapped)
Fragments: 44362029 total (42875329 tlen-paired, 19403 hash-paired, 7412 singletons, 286565 discordant, 1173320 orphans, 114320 too large [>5000 bp], 10268725 duplicates)