Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_W5A-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_W5A-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_W5A-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_W5A-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71548206 total, 62304 skipped (flags/unmapped)
Fragments: 35897880 total (35543180 tlen-paired, 25648 hash-paired, 5445 singletons, 6268 discordant, 317339 orphans, 6463 too large [>5000 bp], 7150959 duplicates)
Reads: 78141073 total, 55003 skipped (flags/unmapped)
Fragments: 39219215 total (38819429 tlen-paired, 26218 hash-paired, 5802 singletons, 4998 discordant, 362768 orphans, 8105 too large [>5000 bp], 7823781 duplicates)
Reads: 79081594 total, 57232 skipped (flags/unmapped)
Fragments: 39687759 total (39271530 tlen-paired, 28600 hash-paired, 5977 singletons, 6621 discordant, 375031 orphans, 14926 too large [>5000 bp], 7878484 duplicates)
Reads: 80387134 total, 101214 skipped (flags/unmapped)
Fragments: 40524152 total (39328754 tlen-paired, 27626 hash-paired, 6054 singletons, 226284 discordant, 935434 orphans, 89552 too large [>5000 bp], 7994238 duplicates)