Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_OLD-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OLD-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OLD-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OLD-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69517542 total, 62866 skipped (flags/unmapped)
Fragments: 34873655 total (34541165 tlen-paired, 24255 hash-paired, 5124 singletons, 6853 discordant, 296258 orphans, 4374 too large [>5000 bp], 6382786 duplicates)
Reads: 78497402 total, 107826 skipped (flags/unmapped)
Fragments: 39543603 total (38445740 tlen-paired, 26638 hash-paired, 5897 singletons, 208913 discordant, 856415 orphans, 82341 too large [>5000 bp], 7172816 duplicates)
Reads: 76204651 total, 58555 skipped (flags/unmapped)
Fragments: 38235295 total (37862077 tlen-paired, 24491 hash-paired, 5542 singletons, 5141 discordant, 338044 orphans, 9546 too large [>5000 bp], 7029909 duplicates)
Reads: 76662678 total, 61127 skipped (flags/unmapped)
Fragments: 38459548 total (38080945 tlen-paired, 26004 hash-paired, 5506 singletons, 6978 discordant, 340115 orphans, 14038 too large [>5000 bp], 7035366 duplicates)