Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WKU-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 57034874 total, 45338 skipped (flags/unmapped)
Fragments: 28616442 total (28337746 tlen-paired, 18968 hash-paired, 4018 singletons, 4534 discordant, 251176 orphans, 5923 too large [>5000 bp], 4419242 duplicates)
Reads: 56682830 total, 54243 skipped (flags/unmapped)
Fragments: 28427836 total (28159651 tlen-paired, 19616 hash-paired, 4025 singletons, 5334 discordant, 239210 orphans, 8075 too large [>5000 bp], 4407612 duplicates)
Reads: 62798451 total, 47145 skipped (flags/unmapped)
Fragments: 31507748 total (31203831 tlen-paired, 20278 hash-paired, 4319 singletons, 3977 discordant, 275343 orphans, 7736 too large [>5000 bp], 4868630 duplicates)
Reads: 63825002 total, 79463 skipped (flags/unmapped)
Fragments: 32148706 total (31269723 tlen-paired, 20977 hash-paired, 4556 singletons, 170053 discordant, 683397 orphans, 68040 too large [>5000 bp], 4916904 duplicates)